研究目的
To identify master regulator genes of UV response and their implications for skin carcinogenesis.
研究成果
The study uncovered novel UV master regulators that can be explored as new therapeutic targets for future skin cancer treatment. It demonstrated that selective inhibition of FOXM1, whose activity was elevated in SCC cells, was detrimental to SCC cell survival, highlighting the importance of these MRs in skin cancer development.
研究不足
The study focuses on the identification of master regulator genes and their implications in skin carcinogenesis, but the mechanisms underpinning the upregulation of these tumor-promoting MRs remain to be elucidated. Additionally, the study's findings are based on computational, experimental, and clinical evidence, which may require further validation in larger cohorts.
1:Experimental Design and Method Selection:
Utilized VIPER, a systems biology tool, on UV-specific skin cell gene signatures to identify master regulators of UV-induced transcriptomic changes.
2:Sample Selection and Data Sources:
RNA-seq gene expression data files were obtained from Gene Expression Omnibus (GEO) for UV-irradiated and corresponding non-irradiated control samples and five pairs of human SCC samples with matched adjacent normal skin.
3:List of Experimental Equipment and Materials:
Anti-FOXM1 antibody, Zeiss fluorescence confocal microscope, thiostrepton.
4:Experimental Procedures and Operational Workflow:
Performed ARACNe and VIPER analyses on RNA-seq data, immunofluorescence staining, CRISPR/Cas9-mediated deletion of FOXM1 in SCC13 cells.
5:Data Analysis Methods:
Differential gene expression analysis using DESeq2 R software package, gene set enrichment analysis (GSEA), survival analysis using Cox proportional hazard (CoxPH) regression model.
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