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A Label-free Platform for Identification of Exosomes from Different Sources

DOI:10.1021/acssensors.8b01564 期刊:ACS Sensors 出版年份:2019 更新时间:2025-09-23 15:22:29
摘要: Exosomes contain cell- and cell-state-specific cargos of proteins, lipids, and nucleic acids and play significant roles in cell signaling and cell–cell communication. Current research into exosome-based biomarkers has relied largely on analyzing candidate biomarkers, i.e., specific proteins or nucleic acids. However, this approach may miss important biomarkers that are yet to be identified. Alternative approaches are to analyze the entire exosome system, either by “omics” methods or by techniques that provide “fingerprints” of the system without identifying each individual biomolecule component. Here, we describe a platform of the latter type, which is based on surface-enhanced Raman spectroscopy (SERS) in combination with multivariate analysis, and demonstrate the utility of this platform for analyzing exosomes derived from different biological sources. First, we examined whether this analysis could use exosomes isolated from fetal bovine serum using a simple, commercially available isolation kit or necessitates the higher purity achieved by the “gold standard” ultracentrifugation/filtration procedure. Our data demonstrate that the latter method is required for this type of analysis. Having established this requirement, we rigorously analyzed the Raman spectral signature of individual exosomes using a unique, hybrid SERS substrate made of a graphene-covered Au surface containing quasi-periodic array of pyramids. To examine the source of the Raman signal, we used Raman mapping of low and high spatial resolution combined with morphological identification of exosomes by scanning electron microscopy. Both approaches suggested that the spectra were collected from single exosomes. Finally, we demonstrate for the first time that our platform can distinguish among exosomes from different biological sources based on their Raman signature, a promising approach for developing exosome-based fingerprinting. Our study serves as a solid technological foundation for future exploration of the roles of exosomes in various biological processes and their use as biomarkers for disease diagnosis and treatment monitoring.
作者: Zhongbo Yan,Suman Dutta,Zirui Liu,Xinke Yu,Neda Mesgarzadeh,Feng Ji,Gal Bitan,Ya-Hong Xie
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To develop and demonstrate a label-free platform using surface-enhanced Raman spectroscopy (SERS) combined with multivariate analysis for identifying and distinguishing exosomes from different biological sources, aiming to provide a fingerprinting approach for exosome-based biomarkers without relying on specific candidate molecules.

The SERS-based platform successfully distinguishes exosomes from different biological sources with high sensitivity (>84%) and low overlap (<5%), demonstrating its potential as a label-free, single-exosome analysis tool for biomarker discovery and disease diagnosis. It provides a foundation for further research into exosome roles in biology and medicine.

The study requires high-purity exosome isolation via ultracentrifugation/filtration, which is time-consuming and low-yield, limiting scalability. Commercial kits like ExoQuick introduce heterogeneity and noise. The spatial resolution of Raman spectroscopy may not precisely measure exosome size due to the laser spot size being larger than exosomes. Future improvements could involve advanced algorithms like deep neural networks for better spectral separation.

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