研究目的
To develop a conformational switch-based fluorescent biosensor for the sensitive and homogeneous detection of telomerase activity, which is important for cancer diagnosis and therapy.
研究成果
The redesigned Spinach aptamer-based biosensor enables sensitive detection of telomerase activity with a low detection limit of 100 Hela cells, differentiates cancer from normal cells, and assesses inhibitor efficiency, showing promise for cancer diagnosis and therapeutic applications.
研究不足
The paper does not explicitly state limitations, but potential areas for optimization could include further reducing background noise, improving specificity in complex biological samples, and enhancing the stability of the RNA probes.
1:Experimental Design and Method Selection:
The method involves redesigning the Spinach RNA aptamer to be inactive in its native state and activated upon hybridization with telomerase reaction products (TRPs), utilizing RNase H for signal amplification through target recycling.
2:Sample Selection and Data Sources:
Telomerase extracts from human cancer cell lines (HeLa, Huh7, MCF-7) and normal liver cells (HL-7702) were prepared and used.
3:List of Experimental Equipment and Materials:
Oligonucleotides synthesized by Shanghai Sangon Biological Engineering Technology & Services Co. Ltd., DFHBI from Lucerna Technologies, dNTPs, RNase H, DNase I, T7 high scribe kit from TaKaRa, PCR Cleanup Kit from Axygen, TMPyP4 from APExBIO, BSA from Aizite Biotechnology Corp., other reagents from Sinopharm Chemical Reagent Co. Ltd., ultrapure water from Millipore purification system.
4:Experimental Procedures and Operational Workflow:
Preparation of Spinach probe via PCR and T7 transcription, preparation of telomerase extracts from cells, telomerase extension reaction, TRPs-initiated Spinach reconstruction with RNase H, fluorescence detection after incubation with DFHBI.
5:Data Analysis Methods:
Fluorescence intensity measured using an F7000 fluorescence spectrometer, data analyzed for sensitivity, dynamic range, and inhibition efficiency using software like GraphPad Prism.
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F7000 fluorescence spectrometer
F7000
Hitachi
Instrument for measuring fluorescence intensity with specific excitation and emission wavelengths.
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DFHBI
Lucerna Technologies
Small molecule fluorophore that binds to Spinach aptamer to emit fluorescence upon activation.
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RNase H
TaKaRa
Enzyme that hydrolyzes RNA in DNA-RNA hybrids for signal amplification in the target recycling circuit.
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DNase I
TaKaRa
Enzyme used to degrade residual DNA templates after transcription.
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T7 high scribe kit
TaKaRa
Kit for in vitro transcription to produce RNA from DNA templates.
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PCR Cleanup Kit
Axygen
Kit for purifying PCR products.
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TMPyP4
APExBIO
Telomere-binding ligand used as an inhibitor in telomerase activity assays.
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BSA
Aizite Biotechnology Corp.
Bovine serum albumin used in extension buffer to stabilize reactions.
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Millipore purification system
Millipore
System for producing ultrapure water used in solution preparation.
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