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Design of Refolding DNA Aptamer on Single-Walled Carbon Nanotubes for Enhanced Optical Detection of Target Proteins

DOI:10.1021/acs.analchem.9b02177 期刊:Analytical Chemistry 出版年份:2019 更新时间:2025-09-11 14:15:04
摘要: DNA aptamer conjugated single-walled carbon nanotube (Aptamer-SWNT) hybrids have demonstrated effective optical biosensors because of its high selectivity and specificity to a target protein, however, the understanding of SWNT hybridization with an aptamer forming a secondary or tertiary structure is still lacking. We study wrapping methods dependent optical biosensing modulation by insulin and platelet-derived growth factor (PDGF) using the Aptamer-SWNT hybrids and the Aptamer-Anchor-SWNT hybrids with a periodically sequenced single-stranded DNA (ssDNA) as anchoring phases. We observe that the refolding nature of the aptamer and its combination with an anchoring phase are critical to the hybridization, where the remarkable optical sensing properties are attributed to the wrapping procedures including the direct wrapping with sonication and the indirect wrapping through dialysis. The tetrameric parallel-stranded G-quadruplex conformation of insulin binding aptamers (IBA) shows an enhanced fluorescence response quenching when using the directly wrapped Aptamer-Anchor-SWNT hybrids. In addition, helix-structural refolding of PDGF binding aptamers (PBA) on the SWNT vicinity under the indirect wrapping exhibits anchoring length-dependent optical modulation. Furthermore, the consecutive centrifuging processes with the indirect wrapping demonstrate fluorescence response brightening, in which the diameter dependent brightening effect is observed by aptamer-protein interactions. This study provides an understanding the underlying conjugation nature of both the Aptamer-SWNT and the Aptamer-Anchor-SWNT hybrids formation, facilitating exceptional optical sensing modules with consideration of refolding feature of aptamers, selection of anchoring phases, wrapping methods and centrifuging process, and the hybridization voyage for DNA-SWNT platforms maneuvers their outcoming optical biosensing capabilities.
作者: Kwan Lee,Jeeyeon Lee,Byungmin Ahn
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Investigating the wrapping methods dependent optical biosensing modulation by insulin and platelet-derived growth factor (PDGF) using DNA aptamer conjugated single-walled carbon nanotube hybrids.

The study concludes that the wrapping procedures, selection of anchoring phases, and centrifuging process significantly affect the optical sensing properties of Aptamer-SWNT and Aptamer-Anchor-SWNT hybrids. The findings provide insights into the conjugation nature of these hybrids and their potential for optical biosensing applications.

The study is limited by the specific aptamers and proteins used, and the wrapping methods may not be universally applicable to all aptamer-SWNT systems.

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