研究目的
Exploring the possibility of generating an optogenetic repressor of gene expression in Saccharomyces cerevisiae by using light to control the nuclear localization of nuclease-dead Cas9, dCas9.
研究成果
The toolkit developed is useful for spatiotemporal perturbation of gene expression in Saccharomyces cerevisiae. The simplicity of the scheme allows these repressors to be easily modified to control gene expression in medically relevant fungi, such as pathogenic yeasts.
研究不足
The light-induced repression achieved is relatively modest (up to 2-fold). Basal repression, as well as time for dilution of the existing Tef1-GFP protein, leads to this low level of light-inducible repression.
1:Experimental Design and Method Selection:
Utilized dCas9, the mammalian transcriptional repressor Mxi1, and an optogenetic tool to control nuclear localization (LINuS) as parts in an existing yeast optogenetic toolkit.
2:Sample Selection and Data Sources:
Used Saccharomyces cerevisiae strains with TEF1-GFP and TEF1-mCherry reporters.
3:List of Experimental Equipment and Materials:
Light Plate Apparatus (LPA), flow cytometry instruments (BD LSRII multi-laser analyzer, Attune NxT Flow Cytometer), Nikon Eclipse-TI inverted microscope.
4:Experimental Procedures and Operational Workflow:
Cultures of yeast were exposed to blue light on a Light Plate Apparatus or in culture tubes on a roller drum inside a light-proof incubator.
5:Data Analysis Methods:
Flow cytometry data was analyzed using FlowJo or custom-written MATLAB code.
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