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Novel fluorescently labelled ATP analogues for direct monitoring of ubiquitin activation

DOI:10.1002/chem.202001091 期刊:Chemistry a?? A European Journal 出版年份:2020 更新时间:2025-09-19 17:13:59
摘要: Simple and robust assays to monitor enzymatic ATP cleavage with high efficiency in real-time are scarce. To address this shortcoming, we developed novel fluorescently labelled adenosine tri-, tetra- and pentaphosphate analogues of ATP. The novel ATP analogues bear – in contrast to earlier reports – only a single acridone-based dye at the terminal phosphate group. The dye’s fluorescence is quenched by the adenine component of the ATP analogue and is restored upon cleavage of the phosphate chain and dissociation of the dye from the adenosine moiety. Thereby the activity of ATP cleaving enzymes can be followed in real-time. We demonstrate this proficiency for ubiquitin activation by the ubiquitin-activating enzymes UBA1 and UBA6 which represents the first step in an enzymatic cascade leading to the covalent attachment of ubiquitin to substrate proteins, a process that is highly conserved from yeast to humans. We found that the efficiency to serve as cofactor for UBA1/UBA6 very much depends on the length of the phosphate chain of the ATP analogue: triphosphates are used poorly while pentaphosphates are most efficiently processed. Notably, the novel pentaphosphate-harbouring ATP analogue supersedes the efficiency of recently reported dual-dye labelled analogues and thus, is a promising candidate for broad applications.
作者: D. Hammler,K. Stuber,F. Offensperger,M. Scheffner,A. Zumbusch,A. Marx
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To develop novel fluorescently labelled adenosine tri-, tetra- and pentaphosphate analogues of ATP for monitoring enzymatic ATP cleavage with high efficiency in real-time, specifically for ubiquitin activation by the ubiquitin-activating enzymes UBA1 and UBA6.

The developed fluorescently labelled ATP analogues, especially the pentaphosphate analogue, are effective for real-time monitoring of ATP cleaving enzymes like UBA1 and UBA6. These analogues simplify the synthesis process and improve enzymatic processing, making them promising for future applications in high-throughput screening for effectors of E1 enzymes.

The study found that the efficiency of the ATP analogues as cofactors for UBA1/UBA6 depends on the length of the phosphate chain, with triphosphates being poorly processed. The novel pentaphosphate analogue showed superior properties but may still interfere with Ub binding compared to natural ATP.

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