研究目的
To develop novel fluorescently labelled adenosine tri-, tetra- and pentaphosphate analogues of ATP for monitoring enzymatic ATP cleavage with high efficiency in real-time, specifically for ubiquitin activation by the ubiquitin-activating enzymes UBA1 and UBA6.
研究成果
The developed fluorescently labelled ATP analogues, especially the pentaphosphate analogue, are effective for real-time monitoring of ATP cleaving enzymes like UBA1 and UBA6. These analogues simplify the synthesis process and improve enzymatic processing, making them promising for future applications in high-throughput screening for effectors of E1 enzymes.
研究不足
The study found that the efficiency of the ATP analogues as cofactors for UBA1/UBA6 depends on the length of the phosphate chain, with triphosphates being poorly processed. The novel pentaphosphate analogue showed superior properties but may still interfere with Ub binding compared to natural ATP.
1:Experimental Design and Method Selection:
The study involved the synthesis of novel fluorescently labelled ATP analogues with a single acridone-based dye at the terminal phosphate group. The fluorescence of the dye is quenched by the adenine component of the ATP analogue and restored upon enzymatic cleavage.
2:Sample Selection and Data Sources:
The ATP analogues were tested for their ability to serve as cofactors for UBA1 and UBA6 in ubiquitin activation.
3:List of Experimental Equipment and Materials:
The synthesis involved commercially available ATP, diisopropylamino dichlorophosphine, and other chemicals for modifying the ATP analogues.
4:Experimental Procedures and Operational Workflow:
The ATP analogues were synthesized, and their fluorescence properties were tested before and after enzymatic cleavage. The activity of UBA1 and UBA6 with these analogues was monitored in real-time.
5:Data Analysis Methods:
The fluorescence lifetime changes were measured to quantify ATP analogue cleavage. The enzymatic activity was also assessed through SDS-PAGE analysis and real-time fluorescence intensity measurements.
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