研究目的
To present SoilJ, an ImageJ plugin for the semiautomatic processing of three-dimensional X-ray images of soils, aiming to reduce the time and expertise required for image processing in vadose zone research.
研究成果
SoilJ facilitates the rapid extraction and quantification of structural features in soil cores, reducing the time and expertise needed for 3-D image analyses. It opens up 3-D X-ray imaging to research groups with less experience in this field. The software is free, open, and extensible, encouraging community-driven development to extend its capabilities.
研究不足
SoilJ has been tested on a limited number of soil column types, and there is no guarantee that all program modules will work error-free for all cylindrical soil columns. The software's effectiveness may vary with different sample geometries and imaging conditions.
1:Experimental Design and Method Selection:
SoilJ is designed as a plugin for ImageJ to automate the processing of 3-D X-ray images of cylindrical soil columns. It includes modules for various processing steps such as column outline recognition, image intensity bias correction, and image segmentation.
2:Sample Selection and Data Sources:
Five different data sets of soil samples were used to demonstrate SoilJ's functionality, including samples from the SOILSPACE, Offer, Bornsj?n, Allotment, and Lancaster projects.
3:List of Experimental Equipment and Materials:
The v|tome|x 240 cone-beam X-ray scanner (General Electric) was used for imaging. SoilJ is a plugin for ImageJ, utilizing additional plugins like BoneJ for analysis.
4:Experimental Procedures and Operational Workflow:
SoilJ processes images in batch mode, automatically applying various image processing steps to all images within a specified folder. The workflow includes column outline detection, image rotation and centering, and removal of unused image parts.
5:Data Analysis Methods:
SoilJ provides tools for quantitative analysis of 3-D images, including porosity calculation, percolation analysis, and extraction of particulate organic matter and roots.
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