研究目的
To determine if MIR spectral data from routine milk recording can predict serum metabolite concentrations with sufficient accuracy to provide useful information on the metabolic health of early-lactation dairy cows, and to assess the robustness of MIR prediction equations with data from different production systems and seasons.
研究成果
MIR spectroscopy of milk can predict serum BHB, fatty acids, and urea concentrations with moderate to good accuracy, but not Ca, Mg, albumin, or globulin. PLS-DA models show promise for classifying metabolic disorders, but require larger and more diverse data sets for improvement. This approach could aid in monitoring herd health and breeding programs.
研究不足
Low prevalence of metabolic disorders in the data set affects model accuracy; predictions for Ca, Mg, albumin, and globulin were poor; models were not robust when applied to different production systems and seasons; more data, especially from early lactation, are needed to improve accuracy.
1:Experimental Design and Method Selection:
Cross-sectional study using MIR spectroscopy and partial least squares regression and discriminant analysis to predict serum metabolite concentrations from milk spectra.
2:Sample Selection and Data Sources:
Serum and milk samples from 773 Holstein Friesian cows on 4 farms in Australia, collected between July and October 2017, with an independent validation set of 105 cows from a different farm in March
3:List of Experimental Equipment and Materials:
20 Blood collection tubes (Becton Dickinson), Kone 20 XT clinical chemistry analyzer (Thermo Fisher Scientific), reagents from Randox Laboratories and Regional Laboratory Services, milk preservative SomaGlo (Bentley Instruments), Bentley Instruments NexGen FTS Combi MIR spectrometer, Matlab R2017a with PLS Toolbox.
4:Experimental Procedures and Operational Workflow:
Blood samples collected from coccygeal vein, processed for serum, analyzed for metabolites; milk samples collected during routine recording, analyzed by MIR spectroscopy; data preprocessing and statistical analysis using PLS regression and PLS-DA.
5:Data Analysis Methods:
Partial least squares regression and discriminant analysis, cross-validation, external validation, assessment using R2, RMSE, sensitivity, specificity, classification error, and AUC.
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