研究目的
To develop a simple, amplified, and multiplexed detection method for microRNAs using time-gated FRET and hybridization chain reaction, improving on current HCR approaches by enabling washing-free sensing, high sensitivity, and multiplexing capabilities.
研究成果
HCR-TG-FRET significantly improves nucleic acid detection by combining enzyme-free amplification with washing-free, highly sensitive, and multiplexed capabilities. It achieves low limits of detection (down to attomole levels), high specificity against homologous miRNAs, and effective performance in biological samples without RNase inhibitors. This approach offers a versatile and powerful tool for advanced biosensing applications, with potential for further multiplexing enhancements.
研究不足
The method may have limitations in higher-order multiplexing beyond two targets without additional spectral distinction, and the accuracy for miR-21 quantification was slightly lower due to sensitivity differences. Potential optimizations could include increasing hairpin concentrations for broader dynamic range and improving precision for certain targets.
1:Experimental Design and Method Selection:
The study implemented time-gated F?rster resonance energy transfer (TG-FRET) with terbium donors and Cy
2:5 dye acceptors into hybridization chain reaction (HCR) for nucleic acid detection. Hairpin probes were designed with specific sequences for miR-20a and miR-21, labeled with Tb or Cy5 to enable FRET upon HCR amplification. Sample Selection and Data Sources:
Synthetic microRNAs (miR-20a, miR-21, miR-20b) and their DNA analogues were used as targets, purchased from Eurogentec. Serum-containing samples were also tested.
3:List of Experimental Equipment and Materials:
Equipment included a clinical immunofluorescence plate reader (KRYPTOR compact plus, Thermo Fisher Scientific), a fluorescence lifetime plate reader (Edinburgh Instruments), a pulsed nitrogen laser (MNL 100, LTB Lasertechnik Berlin), UV/Vis spectrophotometer (Lambda 35, PerkinElmer), fluorometer (Xenius, SAFAS), electrophoresis system (Mini-PROTEAN Tetra, Bio-Rad), and Zeba Spin Desalting Columns (Thermo Fisher Scientific). Materials included Lumi4-Tb-NHS (Lumiphore Inc.), Cyanine
4:5 NHS ester (Lumiprobe), oligonucleotides (Eurogentec), Tris(hydroxymethyl)-aminomethane, bovine serum albumin, HEPES (Sigma-Aldrich), NaCl (Duchefa), and SYBR green II (Thermo Fisher). Experimental Procedures and Operational Workflow:
Hairpin probes were annealed by heating to 95°C and cooling. Targets were incubated with Tb-labeled probes, then Cy
5:5-labeled probes were added to initiate HCR. After incubation, samples were transferred to microtiter plates for TG-FRET measurements using plate readers with specific optical filters. Gel electrophoresis was performed to confirm HCR product formation. Data Analysis Methods:
FRET ratios were calculated from time-gated PL intensities. Calibration curves were used for quantification, and PL decay times were analyzed to determine FRET efficiencies and distances using equations based on F?rster theory.
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KRYPTOR compact plus
KRYPTOR compact plus
Thermo Fisher Scientific
Clinical immunofluorescence plate reader for TG-FRET assays.
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Pulsed nitrogen laser
MNL 100
LTB Lasertechnik Berlin
Excitation source for fluorescence measurements.
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UV/Vis System
Lambda 35
PerkinElmer
Used for recording absorption spectra.
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Zeba Spin Desalting Columns
7 kDa MWCO
Thermo Fisher Scientific
Used for purifying Tb-DNA and dye-DNA conjugates.
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Optical bandpass filter
492/20 nm
Semrock
Used for Tb detection channel in plate readers.
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Optical bandpass filter
716/40 nm
Semrock
Used for Cy5.5 detection channel in plate readers.
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Lumi4-Tb-NHS
Lumiphore Inc.
Used as a terbium donor for FRET in the HCR probes.
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Cyanine5.5 NHS ester
Lumiprobe
Used as a dye acceptor for FRET in the HCR probes.
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Fluorescence lifetime plate reader
Edinburgh Instruments
Used for recording PL decays and time-resolved measurements.
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Fluorometer
Xenius
SAFAS
Used for recording emission spectra.
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Electrophoresis system
Mini-PROTEAN Tetra
Bio-Rad
Used for gel electrophoresis to confirm HCR product formation.
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SYBR green II
Thermo Fisher
DNA stain for gel electrophoresis.
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