研究目的
To demonstrate that CNNs with architectures designed to process both spectral and spatial information can significantly improve classifier performance over per-pixel spectral classification in FTIR spectroscopic imaging for cancer detection.
研究成果
CNNs significantly improve classification accuracy in FTIR imaging by incorporating spatial information, outperforming traditional spectral-based methods. This approach provides a quantitative and objective tool for automated tissue analysis, with potential applications in digital pathology and cancer diagnosis. Future studies should validate this method on larger datasets and diverse tissue types.
研究不足
Training and testing on separate TMAs introduce challenges due to variations in noise, substrate, tissue thickness, and focus. The study is limited to breast tissue and specific cell types; generalization to other tissues or diseases may require further validation. High class imbalance in histological data can bias CNN training.
1:Experimental Design and Method Selection:
The study uses convolutional neural networks (CNNs) to classify FTIR spectroscopic images by leveraging both spectral and spatial features. The design rationale is to overcome limitations of traditional per-pixel spectral classification methods.
2:Sample Selection and Data Sources:
Tissue microarrays (TMAs) of breast tissue cores from different patients were used, obtained from Biomax US. Data includes standard-definition (SD) and high-definition (HD) FTIR images.
3:List of Experimental Equipment and Materials:
FTIR spectrometers (PerkinElmer Spotlight and Agilent Stingray), barium fluoride slides, tissue sections, and software (SIproc, Scikit-learn, TensorFlow).
4:Experimental Procedures and Operational Workflow:
Tissue samples were imaged using FTIR spectroscopy, pre-processed (baseline correction, normalization, PCA), and classified using CNNs and traditional methods like SVM. Training and testing were performed on separate datasets.
5:Data Analysis Methods:
Classification accuracy, sensitivity, specificity, ROC curves, and confusion matrices were analyzed using statistical techniques and software tools.
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