研究目的
To comprehensively characterize the microbial communities associated with solar panels in Berkeley, CA, United States, including their taxonomic and functional diversity, and compare them with those from Valencia, Spain, to understand the colonization and establishment processes under harsh environmental conditions.
研究成果
The microbial communities on solar panels in Berkeley are dominated by stress-resistant bacteria such as Hymenobacter spp., with functional adaptations including stress response and carotenoid biosynthesis pathways. Similarities with Valencia panels suggest common selective pressures and microbial ubiquity. The panels serve as rich sources for biotechnologically interesting bacteria. Future studies should explore broader geographic ranges and mechanistic insights into stress resistance.
研究不足
The study is limited to specific geographic locations (Berkeley and Valencia) and may not represent solar panels in other climates. The culture-dependent methods might not capture the entire microbial diversity. The metabolomics approach relies on detection limits and ionization efficiencies, and absolute quantification was not performed. The functional inferences are based on genomic predictions and require experimental validation.
1:Experimental Design and Method Selection:
The study employed a combination of culture-dependent and culture-independent approaches. Cultivable bacteria were isolated using LB and R2A media at various temperatures to assess adhesive capabilities, UV-resistance, and desiccation-resistance. Metagenomic analysis was conducted using Illumina HiSeq2500 sequencing for taxonomic and functional annotation. Metabolomics was performed using LC-MS/MS to analyze polar metabolites and triglycerides.
2:Sample Selection and Data Sources:
Samples were collected from three independent photovoltaic solar panels at Lawrence Berkeley National Laboratory, Berkeley, CA, USA, and compared with previously collected samples from Valencia, Spain.
3:List of Experimental Equipment and Materials:
Equipment included autoclave-sterilized T-shaped rubber and steel window cleaners, sterile PBS, LB and R2A agar plates, microscope slides, UV lamp (Air Clean 600 PCR workstation), Covaris LE220 for DNA shearing, Illumina HiSeq2500 sequencer, Agilent 1290 LC stack, Q Exactive hybrid Quadrupole-Orbitrap Mass Spectrometer, ZIC-HILIC column, C18 column, and various chemicals and solvents. Materials included PowerSoil DNA extraction kit, internal standards for metabolomics.
4:Experimental Procedures and Operational Workflow:
Sampling involved pouring sterile PBS on solar panel surfaces and scraping with squeegees. Culturing was done on LB and R2A at 4°C, RT, 27°C, and 50°C. DNA extraction followed a lysozyme and bead-beating protocol. Metagenomic library construction involved shearing, end-repair, adapter ligation, and PCR. Sequencing and data processing used BBDuk, BBMap, megahit assembler, and annotation pipelines. Metabolite extraction used methanol and chloroform methods. LC-MS/MS conditions were specified for polar and lipid analyses.
5:Data Analysis Methods:
Taxonomic analysis used Centrifuge and NCBI databases. Functional analysis used SEED subsystems and DIAMOND. Statistical analyses were performed with STAMP and R. Metabolomics data were analyzed using a python-based metabolite atlas for identification based on exact mass, retention time, and MS/MS spectra.
独家科研数据包,助您复现前沿成果,加速创新突破
获取完整内容-
Q Exactive hybrid Quadrupole-Orbitrap Mass Spectrometer
Q Exactive
Thermo Scientific
Used for LC-MS/MS based metabolomics to detect and identify metabolites.
-
Agilent 1290 LC stack
1290
Agilent
Chromatographic separation for metabolomics analysis.
-
C18 column
ZORBAX Eclipse Plus C18, Rapid Resolution HD
Agilent
Used for separation of triglycerides in LC-MS/MS.
-
Illumina HiSeq2500
HiSeq2500
Illumina
Used for metagenomic sequencing to analyze the taxonomic and functional diversity of microbial communities.
-
ZIC-HILIC column
ZIC-HILIC
Merck Millipore
Used for separation of polar metabolites in LC-MS/MS.
-
Covaris LE220
LE220
Covaris
Used for shearing DNA to 300 bp for metagenomic library construction.
-
Air Clean 600 PCR workstation
Air Clean 600
Not specified
Equipped with UV light for irradiation experiments in culturing and resistance tests.
-
PowerSoil DNA extraction kit
PowerSoil
MoBio
Used for DNA isolation from solar panel samples.
-
Microscope slides
VWR CAT No. 48393048
VWR
Used in colonization, UV-resistance, and desiccation-resistance assays.
-
SPRI beads
SPRI beads
Beckman Coulter
Used for size selection in metagenomic library construction.
-
TruSeq Rapid paired-end cluster kit
TruSeq Rapid v.4
Illumina
Used for sequencing on Illumina HiSeq2500.
-
Internal standards for metabolomics
Various, e.g., 15N,13C amino acid mix, ABMBA, deuterated lipids
Sigma, Avanti
Used for quality control and quantification in metabolomics analysis.
-
登录查看剩余10件设备及参数对照表
查看全部