研究目的
To cover the role of multispectral imaging (MSI) in anatomic pathology for the analysis of formalin-fixed, paraffin-embedded (FFPE) tissue sections, discuss its technical aspects, and review its application in characterizing immune cell infiltrates for prognostic, predictive value, and guidance of immunotherapeutic strategies.
研究成果
MSI allows for the quantification and characterization of immune cell infiltrates in tumor microenvironments, providing valuable prognostic and predictive information that can guide immunotherapeutic strategies. It enables detailed analysis of cell-cell interactions and protein expression, advancing the understanding of tumor-host interactions.
研究不足
The technique harbors problems concerning quantitative preciseness and tissue autofluorescence in multicolor staining with FFPE tissues. Background staining and potential damage to epitopes in murine tissues if heated are noted. Cytokeratin staining may not cover all tumor cells, affecting segmentation accuracy.
1:Experimental Design and Method Selection:
The methodology involves using multispectral imaging (MSI) for multiplex immunohistochemistry (IHC) to quantify multiple proteins in tissue sections, with protocols for human and murine tissues. It includes tissue preparation, deparaffinization, antigen retrieval, antibody staining with specific panels, DAPI staining, mounting, and imaging using automated systems.
2:Sample Selection and Data Sources:
Human FFPE tissue samples and murine zinc-fixed, paraffin-embedded tissue samples are used, selected based on tissue type and availability.
3:List of Experimental Equipment and Materials:
Includes microtome, orbital shaker, microwave, Vectra or Polaris imaging systems, various antibodies, Opal kits, and chemicals like DMSO and TBS-T.
4:Experimental Procedures and Operational Workflow:
Detailed step-by-step protocols for slide preparation, deparaffinization, antigen retrieval, sequential antibody staining with tyramide signal amplification, DAPI staining, mounting, and spectral imaging with software analysis using InForm and Phenochart.
5:Data Analysis Methods:
Spectral library creation, tissue and cell segmentation, phenotyping, and statistical analysis using Excel, R, SPSS, or Prism software.
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Vectra
Automated Quantitative Pathology Imaging System
PerkinElmer
Used for multispectral imaging and analysis of tissue samples.
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Polaris
Automated Quantitative Pathology Imaging System
PerkinElmer
Used for multispectral imaging and analysis of tissue samples.
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InForm
Image Analysis Software v.3.0.4
PerkinElmer
Software for building spectral libraries, tissue segmentation, cell segmentation, and phenotyping analysis.
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Phenochart
Software v.1.0.5
PerkinElmer
Software for reviewing and selecting regions of interest in images.
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Opal 7-color Manual IHC Kit
50 slides
PerkinElmer
Kit containing fluorophores, DAPI, amplification diluent, blocking/antibody diluent, polymer HRP, and antigen retrieval buffers for multiplex immunohistochemistry.
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StainTray
30 Place with Black Lid
Newcomer Supply
Tray for holding slides during staining procedures.
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ImmEdge Hydrophobic Barrier Pen
Vector Labs
Pen for marking tissue borders on slides to prevent reagent spread.
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VectaShield Hardset Mounting Medium
Vector Labs
Mounting medium for coverslipping slides to preserve samples.
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Leica Autostainer
Leica
Automated system for deparaffinization and staining of tissue slides.
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Orbital Shaker
Equipment for shaking slides during incubation steps to ensure even reagent distribution.
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Microtome
Instrument for slicing thin sections of tissue samples.
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