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Using Deep Learning with Large Dataset of Microscope Images to Develop an Automated Embryo Grading System

DOI:10.1142/S2661318219500051 期刊:Fertility & Reproduction 出版年份:2019 更新时间:2025-11-21 11:24:58
摘要: The assessment of embryo viability for in vitro fertilization (IVF) is mainly based on subjective visual analysis, with the limitation of intra- and inter-observer variation and a time-consuming task. In this study, we used deep learning with large dataset of microscopic embryo images to develop an automated grading system for embryo assessment. This study included a total of 171,239 images from 16,201 embryos of 4,146 IVF cycles at Stork Fertility Center (https://www.e-stork.com.tw) from March 6, 2014 to April 13, 2018. The images were captured by inverted microscope (Zeiss Axio Observer Z1) at 112 to 116 hours (Day 5) or 136 to 140 hours (Day 6) after fertilization. Using a pre-trained network trained on the ImageNet dataset as convolution base, we applied Convolutional Neural Network (CNN) on embryo images, using ResNet50 architecture to fine-tune ImageNet parameters. The predicted grading results was compared with the grading results from trained embryologists to evaluate the model performance. The images were labeled by trained embryologists, based on Gardner’s grading system: blastocyst development ranking from 3–6, ICM quality as A, B, or C; and TE quality as a, b, or c. After pre-processing, the images were divided into training, validation, and test groups, in which 60% were allocated to the training group, 20% to the validation group, and 20% to the test group. The ResNet50 algorithm was trained on the 60% images allocated to the training group, and the algorithm’s performance was evaluated using the 20% images allocated to the test group. The results showed an average predictive accuracy of 75.36% for the all three grading categories: 96.24% for blastocyst development, 91.07% for ICM quality, and 84.42% for TE quality. To the best of our knowledge, this is the first study of an automatic embryo grading system using large dataset from Asian population. Combing the promising results obtained in this study with time-lapse microscope system integrated with IVF Electronic Medical Record platform, a fully automated and non-invasive pipeline for embryo assessment will be achieved.
作者: Tsung-Jui Chen,Wei-Lin Zheng,Chun-Hsin Liu,Ian Huang,Hsing-Hua Lai,Mark Liu
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To develop an automated grading system for embryo assessment in IVF using deep learning with a large dataset of microscopic embryo images to overcome the limitations of subjective visual analysis.

The developed CNN-based prediction model achieved an overall accuracy of 75.36%, with high accuracies for blastocyst development (96.24%), ICM quality (91.07%), and TE quality (84.42%). This study is the first to use a large dataset from an Asian population for automated embryo grading, demonstrating the potential for a fully automated, non-invasive embryo assessment system when integrated with time-lapse microscopy and IVF Electronic Medical Records.

The study used raw microscopic images without advanced image segmentation, which may impact grading accuracy due to suboptimal contrast or inclusion of early blastocysts. The dataset is from a single fertility center in Asia, limiting generalizability to other populations. The model's performance may be affected by imbalanced class distributions, particularly in ICM grading.

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